This is an example of VEGA prefs file. This file must be placed
in Data directory.
; ******************************************** ; **** VEGA V1.1 - Preferences **** ; **** (c) 1997-2000, Alessandro Pedretti **** ; **** All rights reserved **** ; ******************************************** ; This file can be changed manually with a text editor. No errors will be ; displayed by vega loading the configuration. ; General preferences: ; ~~~~~~~~~~~~~~~~~~~~ ; Default output format: OUTFORMAT PDB ; Starting residue for renumbering: RENSTART 1 ; Interaction energy calculation: ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ; Residue name & number (format RESNAME:RESNUM): ENERGY_RES 9999 ; Cutoff distance (Amstrong): ENERGY_CUTOFF 10.0 ; Filter for energy decopmosition by residue (%): ENERGY_FILTER 1.0 ; Dielectric constant: ENERGY_DIEL 1 ; Mopac parameters: ; ~~~~~~~~~~~~~~~~~ ; Default keywords: MOPAC_DEF AM1 PRECISE ; Charge calculation (AUTO/charge): MOPAC_CRG AUTO ; Peptide bond correction (AUTO/ON/OFF): MOPAC_MMOK AUTO ; SAS parameters: ; ~~~~~~~~~~~~~~~ ; Probe radius (A): SAS_PROBERAD 1.4 ; Points density: SAS_POINTS 10 ; Shell generation: ; ~~~~~~~~~~~~~~~~~ ; Box length / Sphere radius / Shell (A): SOL_RADIUS 10.0 ; Shape type (Box, Sphere, Shell): SOL_SHAPE BOX