26. Other articles on VEGA and related programs

A. Mazzolari, A. Scaccabarozzi, G. Vistoli, A. Pedretti
"METACLASS, A COMPREHENSIVE CLASSIFICATION SYSTEM FOR PREDICTING THE OCCURRENCE OF METABOLIC REACTIONS BASED ON THE METAQSAR DATABASE"
Molecules. Vol. 26(19), 5857 (2021)

DOI: 10.3390/molecules26195857
 

A. Mazzolari, L. Sommaruga, A. Pedretti, G. Vistoli
"METATREE, A NOVEL DATABASE FOCUSED ON METABOLIC TREES, PREDICTS AN IMPORTANT DETOXIFICATION MECHANISM: THE GLUTATHIONE CONJUGATION"

Molecules. Vol. 26(7), 2098 (2021)

DOI: 10.3390/molecules26072098

 

A. Pedretti, A. Mazzolari, S. Gervasoni, G. Vistoli
"TREE2C: A FLEXIBLE TOOL FOR ENABLING MODEL DEPLOYMENT WITH SPECIAL FOCUS ON CHEMINFORMATICS APPLICATIONS"
Appl. Sci. Vol. 10(21), 7704 (2020)
DOI: 10.3390/app10217704
 

A. Pedretti, A. Mazzolari, G. Vistoli

"WARPENGINE, A FLEXIBLE PLATFORM FOR DISTRIBUTED COMPUTING IMPLEMENTED IN THE VEGA PROGRAM AND SPECIALLY TARGETED FOR VIRTUAL SCREENING STUDIES"
J Chem Inf Model. Vol. 58(6), 1154-1160 (2018)
DOI: 10.1021/acs.jcim.8b00086
 

A. Mazzolari, A.M. Afzal, A. Pedretti, B. Testa, G. Vistoli

"PREDICTION OF UGT-MEDIATED METABOLISM USING THE MANUALLY CURATED METAQSAR DATABASE"
ACS Med Chem Lett. Vol. 10(4), 633-638 (2019)
DOI: 10.1021/acsmedchemlett.8b00603

A. Mazzolari,G. Vistoli, B. Testa, A. Pedretti
"PREDICTION OF THE FORMATION OF REACTIVE METABOLITES BY A NOVEL CLASSIFIER APPROACH BASED ON ENRICHMENT FACTOR OPTIMIZATION (EFO) AS IMPLEMENTED IN THE VEGA PROGRAM"
Molecules. Vol. 23(11), 2955 (2018)
DOI: 10.3390/molecules23112955

A. Pedretti, A. Mazzolari, G. Vistoli, B. Testa

"METAQSAR: AN INTEGRATED DATABASE ENGINE TO MANAGE AND ANALYZE METABOLIC DATA"

J Med Chem. Vol. 61(3), 1019-1030 (2018)
DOI: 10.1021/acs.jmedchem.7b01473

 

G. Vistoli, A. Pedretti, A. Mazzolari, B. Testa
"HOMOLOGY MODELING AND METABOLISM PREDICTION OF HUMAN CARBOXYLESTERASE-2 USING DOCKING ANALYSES BY GRIDOCK: A PARALLELIZED TOOL BASED ON AUTODOCK 4.0"
J Comput Aided Mol Des. Vol. 24(9), 771-787 (2010)
DOI: 10.1007/s10822-010-9373-1

 

A. Pedretti, L. Villa, G. Vistoli
"VEGA - AN OPEN PLATFORM TO DEVELOP CHEMO-BIO-INFORMATICS APPLICATIONS, USING PLUG-IN ARCHITECTURE AND SCRIPT PROGRAMMING"
J Comput Aided Mol Des. Vol. 18, 167-173 (2004)
DOI: 10.1023/b:jcam.0000035186.90683.f2
 

A. Pedretti, L. Villa, G. Vistoli
"VEGA: A VERSATILE PROGRAM TO CONVERT, HANDLE AND VISUALIZE MOLECULAR STRUCTURE ON WINDOWS-BASED PCs"
J Mol Graph Model. Vol. 21, 47-49 (2002)
DOI: 10.1016/s1093-3263(02)00123-7
 

A. Pedretti, L. Villa, G. Vistoli
"ATOM-TYPE DESCRIPTION LANGUAGE: A UNIVERSAL LANGUAGE TO RECOGNIZE ATOM TYPES IMPLEMENTED IN THE VEGA PROGRAM"
Theor Chem Acc. Vol. 109 (4), 229-32 (2003)
DOI: 10.1007/s00214-002-0402-6