This file shows how to run predator on the example of the FIS protein and related proteins found in the SWISSPROT database by a FASTA search. See documentation for details. 1) predator -h 3fis.seq Sice -u option has not been specified, PREDATOR will find the FIS protein in its sequence/structure database and will simply use the known assignment as prediction. 2) predator -h 3fis.seq -u A genuine prediction will be generated for the first sequence in the set (3fis) using other sequences. 3) predator -h 3fis.seq -s -u A genuine prediction will be generated for the first sequence in the set (3fis) without using other sequences (single sequence prediction) If PREDATOR has not been installed properly and you just want to try it quickly after unpacking, you will have to specify all file paths explicitely: e.g., for SGI: ../exe/irix.exe -h -b../exe/stride.dat 3fis.seq