10.8 Included scripts OpenGL

 

10.8.1 Introduction

The VEGA package includes some scripts placed in the Scripts directory with the following sub-directory structure:

Scripts
     Batch processing
  Common
Databases
Examples
Internet
Protein tools
Utilities

 

10.8.2 Batch processing

This directory includes batch processing scripts:

Automatic quenching.r Automatic quenching for dynamics trajectory files
Format conversion.r  File format conversion
Mopac.r  Multiple Mopac runs

 

10.8.3 Common

This directory contains the initialization scripts to include in the REBOL scripts:

fmod.r Fmod commands
formats.r File format keywords and other definitions
utils.r Functions for path manipulation
vega.r VEGA interface (don't change it without any reason)
vegadef.r Default settings used by vega.r

 

10.8.5 Database

This directory includes the scripts for the database manipulation.

expander.r Database eXpander.
It's a REBOL/view script able to extract the molecules contained in a database into a directory specifying the file format, the compression and the save attributes (connectivity and constraints). 

 

10.8.4 Examples

This directory includes the example scripts:

demo.bat Demo script
demo.r The same of the above, but written in REBOL
info.r  Show some infos in the VEGA console
mp3player.r Minimalist mp3 player (fmod demo)
requesters.r Simple demo of the VEGA built-in requesters

 

10.8.5 Internet

This directory includes Internet-related scripts:

websrv.r Mini Web server for on-line manual

 

10.8.6 Protein tools

This directory includes the visualization scripts:

Color by aminoacid properties.r Show the molecule by the aminoacid properties
Color aminoacid.r Show the molecule by the selected aminoacids
Fasta to text.r Convert a Fasta into a text file. That's is useful to load it into Excel.

 

10.8.8 Utilities

This directory includes the generic scripts. Some of these require REBOL/View.

Calculator.r Simple calculator
Clock.r Digital clock
Image viewer.r Image viewer